Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2670447 chr1:227437515 A/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2670450 chr1:227398179 A/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs2670451 chr1:227430191 G/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2670464 chr1:227432196 G/C 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2686373 chr12:121609944 G/A 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs2686374 chr12:121609953 T/C 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs2686375 chr12:121611929 T/C 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2686376 chr12:121614337 T/C 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2686377 chr12:121614338 G/A 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2686378 chr12:121614536 G/A 2.28E-5 116 49.4 46.27 24.87 KM Plot
THYM rs2686379 chr12:121617260 G/A 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2686380 chr12:121617707 C/T 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2692041 chr2:30696067 G/A 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs2718197 chr1:227427644 T/C 0.000137 118 42.9 37.13 19.63 KM Plot
THYM rs2718200 chr1:227430841 T/C 0.000123 119 42.82 37.13 19.63 KM Plot